Maxim Kuleshov

Maxim Kuleshov

Mentor
Rising Codementor
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For every 15 mins
ABOUT ME
Bioinformatician with a decade of full-stack development expertise, specializing in biological data analysis pipelines and data integration.
Bioinformatician with a decade of full-stack development expertise, specializing in biological data analysis pipelines and data integration.

I am a Bioinformatics Engineer with over ten years of experience in both academic and industry settings. My career began in academia, where I developed several web services, including the highly-cited tool for gene set enrichment analysis Enrichr, and published fifteen papers over eight years. I have a strong foundation in developing analysis pipelines for expression data, particularly in RNA-Seq and differential expression analysis. In 2022, I transitioned to the industry, where I've applied my expertise in bioinformatics and full-stack development to enhance product development and user experience. My skill set spans from programming and DevOps to data visualization, with a deep understanding of the intersection between biological data and computational tools.

Eastern Time (US & Canada) (-04:00)
Joined May 2021
EXPERTISE
10 years experience
10 years experience
8 years experience
8 years experience

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SOCIAL PRESENCE
GitHub
PyVep
Python wrapper and web-server for Ensembl VEP
Python
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0
GMT_sanitize
Python
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Stack Overflow
146 Reputation
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2
8
EMPLOYMENTS
Senior Bioinformatics Engineer
Code Ocean
2022-06-01-2023-12-01
• Took a crucial role in creating user-friendly applications using Python, Streamlit, Bash, R, and OpenAPI, expanding access to computati...
• Took a crucial role in creating user-friendly applications using Python, Streamlit, Bash, R, and OpenAPI, expanding access to computational tools for a wider audience. • Led the design and implementation of vital bioinformatics tools and Streamlit applications, including a ColabFold app and an enrichment analysis app, contributing to sales and marketing efforts. • Initiated integrations with major platforms like Tableau, DataJoint, and SnowFlake, enhancing data analysis and visualization processes. • Actively participated in crucial business activities, including completing evaluation spreadsheets and addressing client Requests for Proposal (RFPs). • Worked closely with the Science team, providing expert input for project development and taking ownership of products. • Developed over 20 capsules (docker-wrapped tools), substantially boosting the platform’s bioinformatics capabilities. • Created coding and software release guidelines to ensure team consistency and uphold quality standards. • Analyzed customer personas in depth to inform product development and tailor solutions to client needs and goals. • Concentrated on developing docker containers and bioinformatics pipelines, improving the standardization and efficiency of scientific computing processes. • Supported colleagues through complex technical issues, boosting team productivity and problem-solving skills. • Dedicated time to technical writing, crafting detailed documentation for the platform and API to enhance user comprehension and engagement.
Python
Flask
R
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Python
Flask
R
Bash
API
Docker
Bioinformatics
Nextflow
Streamlit
AWS
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Bioinformatician
Mount Sinai
2015-05-01-2022-06-01
• Led the development of Enrichr, a popular web service for biological data analysis, growing its usage from 500 to 100K users and 10K to...
• Led the development of Enrichr, a popular web service for biological data analysis, growing its usage from 500 to 100K users and 10K to 10M submissions annually. • Managed and optimized MySQL databases for diverse gene and drug set libraries. • Developed NGS data analysis pipelines, contributing to 2 published papers. • Authored 12 scientific papers with a h-index of 9 and over 5000 citations. • Mentored 17 summer interns, leading to 12 MVPs and 5 published papers. • Presented at over 20 national and international scientific conferences.
Python
Java
SQL
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Python
Java
SQL
Flask
R
D3.js
Full Stack
Docker
JavaScript
Bioinformatics
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