Senior Bioinformatics Engineer
Code Ocean
2022-06-01-2023-12-01
• Took a crucial role in creating user-friendly applications using Python, Streamlit, Bash, R, and OpenAPI, expanding access to computati...
• Took a crucial role in creating user-friendly applications using Python, Streamlit, Bash, R, and OpenAPI, expanding access to computational tools for a wider audience.
• Led the design and implementation of vital bioinformatics tools and Streamlit applications, including a ColabFold app and an enrichment analysis app, contributing to sales and marketing efforts.
• Initiated integrations with major platforms like Tableau, DataJoint, and SnowFlake, enhancing data analysis and visualization processes.
• Actively participated in crucial business activities, including completing evaluation spreadsheets and addressing client Requests for Proposal (RFPs).
• Worked closely with the Science team, providing expert input for project development and taking ownership of products.
• Developed over 20 capsules (docker-wrapped tools), substantially boosting the platform’s bioinformatics capabilities.
• Created coding and software release guidelines to ensure team consistency and uphold quality standards.
• Analyzed customer personas in depth to inform product development and tailor solutions to client needs and goals.
• Concentrated on developing docker containers and bioinformatics pipelines, improving the standardization and efficiency of scientific computing processes.
• Supported colleagues through complex technical issues, boosting team productivity and problem-solving skills.
• Dedicated time to technical writing, crafting detailed documentation for the platform and API to enhance user comprehension and engagement.
Python
Flask
R
Bash
API
Docker
Bioinformatics
Nextflow
Streamlit
AWS
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Bioinformatician
Mount Sinai
2015-05-01-2022-06-01
• Led the development of Enrichr, a popular web service for biological data analysis, growing its usage from 500 to 100K users and 10K to...
• Led the development of Enrichr, a popular web service for biological data analysis, growing its usage from 500 to 100K users and 10K to 10M submissions annually.
• Managed and optimized MySQL databases for diverse gene and drug set libraries.
• Developed NGS data analysis pipelines, contributing to 2 published papers.
• Authored 12 scientific papers with a h-index of 9 and over 5000 citations.
• Mentored 17 summer interns, leading to 12 MVPs and 5 published papers.
• Presented at over 20 national and international scientific conferences.
Python
Java
SQL
Flask
R
D3.js
Full Stack
Docker
JavaScript
Bioinformatics
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